Index

A

add_data() (seirmo.plots.IncidenceNumberPlot method) (seirmo.plots.SubplotFigure method) add_data_to_plot() (seirmo.plots.ConfigurablePlotter method)

add_fill() (seirmo.plots.ConfigurablePlotter method) add_simulation() (seirmo.plots.CompartmentPlot method) (seirmo.plots.IncidenceNumberPlot method) (seirmo.plots.SubplotFigure method)

B

begin() (seirmo.plots.ConfigurablePlotter method) (seirmo.SEIROutputCollector method) (seirmo.StochasticOutputCollector method)

C

CompartmentPlot (class in seirmo.plots)

ConfigurablePlotter (class in seirmo.plots) configure_parameters() (seirmo.SEIRParameters method)

D

DatasetLibrary (class in seirmo)

DeterministicSEIRModel (class in seirmo)

F

fix_parameters() (seirmo.ReducedModel method)

ForwardModel (class in seirmo) french_flu() (seirmo.DatasetLibrary method)

G

get_subplots() (seirmo.plots.SubplotFigure method)

I

IncidenceNumberPlot (class in seirmo.plots)

M

module seirmo

N

n_fixed_parameters() (seirmo.ReducedModel method) n_outputs() (seirmo.ForwardModel method) (seirmo.ReducedModel method) (seirmo.SEIRForwardModel method) (seirmo.SEIRModel method) (seirmo.SEIROutputCollector method)

n_parameters() (seirmo.ForwardModel method) (seirmo.ReducedModel method) (seirmo.SEIRForwardModel method) (seirmo.SEIRModel method) (seirmo.SEIRParameters method)

O

output_names() (seirmo.ForwardModel method) (seirmo.ReducedModel method) (seirmo.SEIRForwardModel method) (seirmo.SEIRModel method) (seirmo.SEIROutputCollector method)

P

parameter_names() (seirmo.ForwardModel method) (seirmo.ReducedModel method) (seirmo.SEIRForwardModel method) (seirmo.SEIRModel method) (seirmo.SEIRParameters method)

R

ReducedModel (class in seirmo) report() (seirmo.SEIROutputCollector method) (seirmo.StochasticOutputCollector method)

report_all() (seirmo.SEIROutputCollector method) retrieve() (seirmo.SEIROutputCollector method) retrieve_time() (seirmo.StochasticOutputCollector method)

S

SEIRForwardModel (class in seirmo) seirmo module SEIRModel (class in seirmo) SEIROutputCollector (class in seirmo) SEIRParameters (class in seirmo) set_outputs() (seirmo.ForwardModel method) (seirmo.ReducedModel method) (seirmo.SEIRForwardModel method) (seirmo.SEIRModel method) (seirmo.SEIROutputCollector method)

show() (seirmo.plots.SubplotFigure method) simulate() (seirmo.DeterministicSEIRModel method) (seirmo.ForwardModel method) (seirmo.ReducedModel method) (seirmo.SEIRForwardModel method) (seirmo.SEIRModel method) (seirmo.StochasticSEIRModel method) SimulationController (class in seirmo) solve_gillespie() (in module seirmo) StochasticOutputCollector (class in seirmo) StochasticSEIRModel (class in seirmo) SubplotFigure (class in seirmo.plots)

U

update_propensity() (seirmo.StochasticSEIRModel method)