Welcome to seirmo’s documentation!

This is a project to model the outbreak of an infectious disease with the SEIR model.

Contents

• Plots
  • IncidenceNumberPlot
    • IncidenceNumberPlot.add_data()
    • IncidenceNumberPlot.add_simulation()
  • CompartmentPlot
    • CompartmentPlot.add_simulation()
  • SubplotFigure
    • SubplotFigure.add_data()
    • SubplotFigure.add_simulation()
    • SubplotFigure.get_subplots()
    • SubplotFigure.show()
  • ConfigurablePlotter
    • ConfigurablePlotter.add_data_to_plot()
    • ConfigurablePlotter.add_fill()
    • ConfigurablePlotter.begin()
• Core
  • SEIR Core
    • SEIRForwardModel
      • SEIRForwardModel.n_outputs()
      • SEIRForwardModel.n_parameters()
      • SEIRForwardModel.output_names()
      • SEIRForwardModel.parameter_names()
      • SEIRForwardModel.set_outputs()
      • SEIRForwardModel.simulate()
    • SEIRParameters
      • SEIRParameters.configure_parameters()
      • SEIRParameters.n_parameters()
      • SEIRParameters.parameter_names()
    • SEIROutputCollector
      • SEIROutputCollector.begin()
      • SEIROutputCollector.n_outputs()
      • SEIROutputCollector.output_names()
      • SEIROutputCollector.report()
      • SEIROutputCollector.report_all()
      • SEIROutputCollector.retrieve()
      • SEIROutputCollector.set_outputs()
    • StochasticOutputCollector
      • StochasticOutputCollector.begin()
      • StochasticOutputCollector.report()
      • StochasticOutputCollector.retrieve_time()
• Models
  • SEIR Model
    • ForwardModel
      • ForwardModel.n_outputs()
      • ForwardModel.n_parameters()
      • ForwardModel.output_names()
      • ForwardModel.parameter_names()
      • ForwardModel.set_outputs()
      • ForwardModel.simulate()
    • ReducedModel
      • ReducedModel.fix_parameters()
      • ReducedModel.n_fixed_parameters()
      • ReducedModel.n_outputs()
      • ReducedModel.n_parameters()
      • ReducedModel.output_names()
      • ReducedModel.parameter_names()
      • ReducedModel.set_outputs()
      • ReducedModel.simulate()
    • SEIRModel
      • SEIRModel.n_outputs()
      • SEIRModel.n_parameters()
      • SEIRModel.output_names()
      • SEIRModel.parameter_names()
      • SEIRModel.set_outputs()
      • SEIRModel.simulate()
    • DeterministicSEIRModel
      • DeterministicSEIRModel.simulate()
    • StochasticSEIRModel
      • StochasticSEIRModel.simulate()
      • StochasticSEIRModel.update_propensity()
• Simulations
  • SimulationController
  • Home-Brew Simulation Methods:
    • solve_gillespie()
• Dataset Library
  • Dataset Library
    • DatasetLibrary
      • DatasetLibrary.french_flu()

Search

• Index

• Search Page